skills

WetLab

DNA/RNA extraction, PCR, qPCR, Illumuina library prep, targeted sequencing prep, amplicon sequencing prep

Code

R (preferred), Python, bash

Bioinformatics

targeted capture design, multiplex design, alignment, assembly, annotation, phylogenomics (RAxML, BEAST, iqTREE, nextstrain, TreeTime), and variant calling (GATK, samtools, ANGSD, and Freebayes)

Computing/Data Management

SLURM, Unix tools, git, github, markdown

Statistics

Linear models, mixed models, multivariate, classical statistics, Bayesian statistics

Geospatial

Analysis & visualization in R (sp, sf, ggplot2, raster). Experience with ArcGIS